Journal of Prevention and Treatment for Stomatological Diseases ›› 2019, Vol. 27 ›› Issue (11): 695-702.DOI: 10.12016/j.issn.2096-1456.2019.11.003
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MA Yao1,2,JIANG Zhaowei1,JIN Yunyi1,MIAO Qian1,ZHANG Chunxiang1,3,ZHANG Linkun1,3()
Received:
2019-01-25
Revised:
2019-04-13
Online:
2019-11-20
Published:
2019-12-03
Contact:
Linkun ZHANG
马遥1,2,姜兆伟1,靳云轶1,苗倩1,张春香1,3,张淋坤1,3()
通讯作者:
张淋坤
作者简介:
马遥,医师,硕士,Email: mayao11nku@163.com
基金资助:
CLC Number:
MA Yao,JIANG Zhaowei,JIN Yunyi,MIAO Qian,ZHANG Chunxiang,ZHANG Linkun. Gene ontology analysis of the TNF signaling pathway in early orthodontic tooth movement of rats with periodontitis[J]. Journal of Prevention and Treatment for Stomatological Diseases, 2019, 27(11): 695-702.
马遥,姜兆伟,靳云轶,苗倩,张春香,张淋坤. 大鼠牙周炎正畸牙移动初期TNF信号通路的基因本体分析[J]. 口腔疾病防治, 2019, 27(11): 695-702.
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基因名称 | 属性 | 差异倍数 | P |
---|---|---|---|
Ripk3 | 上调 | 1.562 | 0.018 |
Ccl2 | 上调 | 4.321 | 0.002 |
Mlkl | 上调 | 1.612 | 0.001 |
Casp7 | 上调 | 1.325 | 0.014 |
Ccl12 | 上调 | 1.769 | 0.019 |
Tnf-α | 上调 | 1.741 | 0.001 |
Tnfrsf1a | 上调 | 1.732 | 0.001 |
Ripk1 | 上调 | 1.413 | 0.011 |
Nfkb1 | 上调 | 1.362 | 0.031 |
Rps6ka4 | 上调 | 1.342 | 0.014 |
Socs3 | 上调 | 3.566 | 0.005 |
Tnfaip3 | 上调 | 2.572 | 0.013 |
Traf1 | 上调 | 1.594 | 0.001 |
Ifi47 | 上调 | 1.728 | 0.007 |
Junb | 上调 | 1.633 | 0.031 |
Cxcl2 | 上调 | 12.460 | 0.001 |
Cxcl1 | 上调 | 2.345 | 0.042 |
Cxcl3 | 上调 | 3.841 | 0.001 |
Cxcl10 | 上调 | 2.613 | 0.004 |
Fas | 上调 | 1.337 | 0.033 |
Il-1b | 上调 | 10.583 | <0.001 |
Il-6 | 上调 | 3.306 | 0.013 |
Bcl3 | 上调 | 1.551 | 0.010 |
Mmp3 | 上调 | 7.686 | 0.001 |
Edn1 | 上调 | 1.816 | <0.001 |
Nod2 | 上调 | 1.959 | 0.020 |
Ptgs2 | 上调 | 2.728 | 0.036 |
Tnfrsf1b | 上调 | 1.699 | 0.027 |
下调 | -1.411 | 0.013 | |
Fos | 下调 | -1.714 | 0.008 |
Vcam1 | 下调 | -2.429 | <0.001 |
Birc2 | 下调 | -1.368 | 0.030 |
Pik3cg | 下调 | -1.787 | 0.005 |
Table 2 Differential genes in group A
基因名称 | 属性 | 差异倍数 | P |
---|---|---|---|
Ripk3 | 上调 | 1.562 | 0.018 |
Ccl2 | 上调 | 4.321 | 0.002 |
Mlkl | 上调 | 1.612 | 0.001 |
Casp7 | 上调 | 1.325 | 0.014 |
Ccl12 | 上调 | 1.769 | 0.019 |
Tnf-α | 上调 | 1.741 | 0.001 |
Tnfrsf1a | 上调 | 1.732 | 0.001 |
Ripk1 | 上调 | 1.413 | 0.011 |
Nfkb1 | 上调 | 1.362 | 0.031 |
Rps6ka4 | 上调 | 1.342 | 0.014 |
Socs3 | 上调 | 3.566 | 0.005 |
Tnfaip3 | 上调 | 2.572 | 0.013 |
Traf1 | 上调 | 1.594 | 0.001 |
Ifi47 | 上调 | 1.728 | 0.007 |
Junb | 上调 | 1.633 | 0.031 |
Cxcl2 | 上调 | 12.460 | 0.001 |
Cxcl1 | 上调 | 2.345 | 0.042 |
Cxcl3 | 上调 | 3.841 | 0.001 |
Cxcl10 | 上调 | 2.613 | 0.004 |
Fas | 上调 | 1.337 | 0.033 |
Il-1b | 上调 | 10.583 | <0.001 |
Il-6 | 上调 | 3.306 | 0.013 |
Bcl3 | 上调 | 1.551 | 0.010 |
Mmp3 | 上调 | 7.686 | 0.001 |
Edn1 | 上调 | 1.816 | <0.001 |
Nod2 | 上调 | 1.959 | 0.020 |
Ptgs2 | 上调 | 2.728 | 0.036 |
Tnfrsf1b | 上调 | 1.699 | 0.027 |
下调 | -1.411 | 0.013 | |
Fos | 下调 | -1.714 | 0.008 |
Vcam1 | 下调 | -2.429 | <0.001 |
Birc2 | 下调 | -1.368 | 0.030 |
Pik3cg | 下调 | -1.787 | 0.005 |
基因名称 | 属性 | 差异倍数 | P |
---|---|---|---|
Creb5 | 上调 | 1.364 | 0.049 |
Ccl5 | 上调 | 1.607 | 0.049 |
Fas | 上调 | 1.330 | 0.036 |
Il-18r1 | 上调 | 1.402 | 0.042 |
Cxcl3 | 上调 | 3.152 | 0.004 |
Cx3cl1 | 上调 | 1.334 | 0.046 |
Traf1 | 上调 | 1.406 | 0.011 |
Ifi47 | 上调 | 1.610 | 0.016 |
Edn1 | 上调 | 1.357 | 0.033 |
Sele | 上调 | 1.860 | 0.004 |
Il-1b | 上调 | 3.902 | 0.009 |
Bcl3 | 上调 | 1.468 | 0.021 |
Mapk10 | 下调 | -1.632 | 0.027 |
Jun | 下调 | -1.523 | 0.003 |
Fos | 下调 | -1.648 | 0.012 |
Pik3ca | 下调 | -1.304 | 0.010 |
Table 3 Differential genes in group B
基因名称 | 属性 | 差异倍数 | P |
---|---|---|---|
Creb5 | 上调 | 1.364 | 0.049 |
Ccl5 | 上调 | 1.607 | 0.049 |
Fas | 上调 | 1.330 | 0.036 |
Il-18r1 | 上调 | 1.402 | 0.042 |
Cxcl3 | 上调 | 3.152 | 0.004 |
Cx3cl1 | 上调 | 1.334 | 0.046 |
Traf1 | 上调 | 1.406 | 0.011 |
Ifi47 | 上调 | 1.610 | 0.016 |
Edn1 | 上调 | 1.357 | 0.033 |
Sele | 上调 | 1.860 | 0.004 |
Il-1b | 上调 | 3.902 | 0.009 |
Bcl3 | 上调 | 1.468 | 0.021 |
Mapk10 | 下调 | -1.632 | 0.027 |
Jun | 下调 | -1.523 | 0.003 |
Fos | 下调 | -1.648 | 0.012 |
Pik3ca | 下调 | -1.304 | 0.010 |
基因名称 | 属性 | 差异倍数 | P |
---|---|---|---|
Birc3 | 上调 | 1.655 | 0.032 |
Ccl2 | 上调 | 2.946 | 0.004 |
Ccl20 | 上调 | 1.988 | 0.033 |
Cxcl2 | 上调 | 4.301 | 0.001 |
Cxcl1 | 上调 | 2.840 | <0.001 |
Il-1b | 上调 | 7.269 | <0.001 |
Il-6 | 上调 | 3.581 | <0.001 |
Socs3 | 上调 | 2.047 | 0.012 |
Tnfaip3 | 上调 | 1.894 | <0.001 |
Mmp3 | 上调 | 4.924 | 0.009 |
Sele | 上调 | 1.544 | 0.018 |
Ptgs2 | 上调 | 2.436 | <0.001 |
Fos | 下调 | -1.921 | 0.017 |
Table 4 Differential genes in group C
基因名称 | 属性 | 差异倍数 | P |
---|---|---|---|
Birc3 | 上调 | 1.655 | 0.032 |
Ccl2 | 上调 | 2.946 | 0.004 |
Ccl20 | 上调 | 1.988 | 0.033 |
Cxcl2 | 上调 | 4.301 | 0.001 |
Cxcl1 | 上调 | 2.840 | <0.001 |
Il-1b | 上调 | 7.269 | <0.001 |
Il-6 | 上调 | 3.581 | <0.001 |
Socs3 | 上调 | 2.047 | 0.012 |
Tnfaip3 | 上调 | 1.894 | <0.001 |
Mmp3 | 上调 | 4.924 | 0.009 |
Sele | 上调 | 1.544 | 0.018 |
Ptgs2 | 上调 | 2.436 | <0.001 |
Fos | 下调 | -1.921 | 0.017 |
GO条目 | P | 上调基因 |
---|---|---|
对脂多糖的应答 | <0.001 | TNFrsf1a, TNF-α, TNFrsf1b, Ccl2, Cxcl3, Cxcl10, Cxcl1, Socs3, Junb, Fas, Ptgs2, Fas, Il-6, Il-1β, Mmp3, Nod2 |
炎症反应 | <0.001 | TNFrsf1b, TNF-α, TNFrsf1a, Ccl2, Ccl12, Cxcl3, Cxcl2, Cxcl10, Nfkb1, Fas, Ptgs2, Il-6, Il-1β |
NF-κB转录因子活性的正调控 | <0.001 | Ripk3, Ripk1, Traf1, Nod2 |
对缺氧的应答 | <0.001 | TNF-α, TNFrsf1a, Ccl2, Socs3, Fas, Il-1β, Mmp3 |
Table 5 Gene ontology analysis of the differential genes of group A in the TNF signaling pathway
GO条目 | P | 上调基因 |
---|---|---|
对脂多糖的应答 | <0.001 | TNFrsf1a, TNF-α, TNFrsf1b, Ccl2, Cxcl3, Cxcl10, Cxcl1, Socs3, Junb, Fas, Ptgs2, Fas, Il-6, Il-1β, Mmp3, Nod2 |
炎症反应 | <0.001 | TNFrsf1b, TNF-α, TNFrsf1a, Ccl2, Ccl12, Cxcl3, Cxcl2, Cxcl10, Nfkb1, Fas, Ptgs2, Il-6, Il-1β |
NF-κB转录因子活性的正调控 | <0.001 | Ripk3, Ripk1, Traf1, Nod2 |
对缺氧的应答 | <0.001 | TNF-α, TNFrsf1a, Ccl2, Socs3, Fas, Il-1β, Mmp3 |
GO条目 | P | 上调基因 |
---|---|---|
对脂多糖的应答 | <0.001 | Ccl5, Fas, Cxcl3, Edn1, Il-1β, Il-6, Ptgs2 |
炎症反应 | <0.001 | TNF-α, Ccl5, Fas, Cxcl3, Cx3cl1, Sele, Il-1β, Il-6, Ptgs2 |
NF-κB进入细胞核的正调控 | <0.001 | Il-18r1, Il-1β, Ptgs2 |
Table 6 Gene ontology analysis of the differential genes of group B in the TNF signaling pathway
GO条目 | P | 上调基因 |
---|---|---|
对脂多糖的应答 | <0.001 | Ccl5, Fas, Cxcl3, Edn1, Il-1β, Il-6, Ptgs2 |
炎症反应 | <0.001 | TNF-α, Ccl5, Fas, Cxcl3, Cx3cl1, Sele, Il-1β, Il-6, Ptgs2 |
NF-κB进入细胞核的正调控 | <0.001 | Il-18r1, Il-1β, Ptgs2 |
GO条目 | P | 上调基因 |
---|---|---|
炎症反应 | <0.001 | Ccl2,Ccl20,Cxcl2,Il1β,Il6,Sele,Ptgs2 |
中性粒细胞趋化 | <0.001 | Ccl2,Ccl20,Cxcl2,Cxcl1 |
对缺氧的应答 | <0.001 | Ccl2,Socs3,Mmp3 |
Table 7 Gene ontology analysis of the differential genes of group C in the TNF signaling pathway
GO条目 | P | 上调基因 |
---|---|---|
炎症反应 | <0.001 | Ccl2,Ccl20,Cxcl2,Il1β,Il6,Sele,Ptgs2 |
中性粒细胞趋化 | <0.001 | Ccl2,Ccl20,Cxcl2,Cxcl1 |
对缺氧的应答 | <0.001 | Ccl2,Socs3,Mmp3 |
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